Downloads

Downloads COBRA Toolbox

• A software package running in the MATLAB environment which allows for quantitative prediction of cellular behavior using a constraint-based approach. Becker, S. et al., "Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox", Nat. Protoc 2, 727-738 (2007).

BiGG Database

• A Biochemical Genetic and Genomic Database of large scale metabolic reconstructions. This is the easiest way to export and browse all reconstructions.

• Schellenberger, J., Park, J. O., Conrad, T. M., and Palsson, B. Ø., "BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions", BMC Bioinformatics, 11:213, (2010).

Flux Balance Analysis

Extreme Pathway Analysis

SBML generator - SimPheny output specific

• (A perl program that converts SimPheny output to SBML level 2, version 1)

Core E. coli Model

• The core E. coli model and accompanying files.

Supplemental Data

Other material

• Presentations
• For organism-related downloads, such as metabolic network properties please click here
• Have a look at the Photo Gallery!