E. coli Reconstruction Files

Current News:

We have published an updated and expanded reconstruction for E. coli that should enable a broader scope of analyses:

Feist, A.M., Henry, C.S., Reed, J.L., Krummenacker, M., Joyce, A.R., Karp, P.D., Broadbelt, L.J., Hatzimanikatis, V., Palsson, B.Ø. "A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information" Molecular Systems Biology 3:121 (2007)

Information is available as supplementary data on the journal website and additional expanded files are provided below.

We have the following information available:

• Available SBML files for E. coli

• E. coli Metabolic Reactions (Excel and GAMS)

• List of E. coli iAF1260 gaps

• E. coli Metabolic Maps

• E. coli Regulatory Network

• E. coli GPR Associations

• Analysis of the E. coli Network by Other Research Groups

• Other E. coli Databases

• E. coli expression data

• Frequently Asked Questions

To suggest an update to iAF1260:

Please make a note in this google document, including a PubMed ID if available. (GOOGLE DOC NOT WORKING)

If you have further questions about a computational modeling of E. coli:

please email us at afeist@ucsd.edu.