| A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory. |
J. Nogales; B.Ø. Palsson; I. Thiele |
2008 |
| A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. |
M.J. Herrgard; N. Swainston; P. Dobson; W.B. Dunn; Y.K. Arga; M. Arvas; N. Blüthgen; S. Borger; R. Costenoble; M. Heinemann; M. Hucka; N. Le Novère; P. Li; W. Liebermeister; M.L. Mo; A.P. Oliveira; D. Petranovic; S. Pettifer; E. Simeonidis; K. Smallbone; I. Spasić; D. Weichart; R. Brent; D.S. Broomhead; H.V. Westerhoff; B. Kirdar; M. Penttilä; E. Klipp; B.Ø. Palsson; U. Sauer; S.G. Oliver; P. Mendes; J. Nielsen; D.B. Kell |
2008 |
| Aerobic fermentation of D-glucose by an evolved cytochrome oxidase-deficient Escherichia coli strain. |
V.A. Portnoy; M.J. Herrgard; B.Ø. Palsson |
2008 |
| Three factors underlying incorrect in silico predictions of essential metabolic genes. |
S.A. Becker; B.Ø. Palsson |
2008 |
| Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli. |
B.K. Cho; C.L. Barrett; E.M. Knight; Y.S. Park; B.Ø. Palsson |
2008 |
| Formulating genome-scale kinetic models in the post-genome era. |
N. Jamshidi; B.Ø. Palsson |
2008 |
| Systems analysis of energy metabolism elucidates the affected respiratory chain complex in Leigh's syndrome. |
T.D. Vo; W.N. Paul Lee; B.Ø. Palsson |
2007 |
| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. |
S.A. Becker; A.M. Feist; M.L. Mo; G. Hannum; B.Ø. Palsson; M.J. Herrgard |
2007 |
| Crystal structure of a hyperactive Escherichia coli glycerol kinase mutant Gly230 --> Asp obtained using microfluidic crystallization devices. |
M.J. Anderson; B. DeLabarre; A. Raghunathan; B.Ø. Palsson; A.T. Brunger; S.R. Quake |
2007 |
| Metabolic characterization of Escherichia coli strains adapted to growth on lactate. |
Q. Hua; A.R. Joyce; B.Ø. Palsson; S. Fong |
2007 |
| Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. |
N. Jamshidi; B.Ø. Palsson |
2007 |
| In silico analysis of SNPs and other high-throughput data. |
N. Jamshidi; T.D. Vo; B.Ø. Palsson |
2007 |
| Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data. |
Y.K. Oh; B.Ø. Palsson; S.M. Park; C.H. Schilling; R. Mahadevan |
2007 |
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. |
A.M. Feist; C.S. Henry; J.L. Reed; M. Krummenacker; A.R. Joyce; P.D. Karp; L.J. Broadbelt; V. Hatzimanikatis; B.Ø. Palsson |
2007 |
| Building the power house: recent advances in mitochondrial studies through proteomics and systems biology. |
T.D. Vo; B.Ø. Palsson |
2007 |
| An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes. |
C.D. Herring; B.Ø. Palsson |
2007 |
| A genome-scale, constraint-based approach to systems biology of human metabolism. |
M.L. Mo; N. Jamshidi; B.Ø. Palsson |
2007 |
| Microbial regulatory and metabolic networks. |
B.K. Cho; P. Charusanti; M.J. Herrgard; B.Ø. Palsson |
2007 |
| Systematic condition-dependent annotation of metabolic genes. |
T. Shlomi; M.J. Herrgard; V.A. Portnoy; E. Naim; B.Ø. Palsson; R. Sharan; E. Ruppin |
2007 |
| Estimation of the number of extreme pathways for metabolic networks. |
M. Yeung; I. Thiele; B.Ø. Palsson |
2007 |
| Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli. |
O. Resendis-Antonio; J.L. Reed; S. Encarnación; J. Collado-Vides; B.Ø. Palsson |
2007 |
| Toward whole cell modeling and simulation: comprehensive functional genomics through the constraint-based approach. |
A.R. Joyce; B.Ø. Palsson |
2007 |
| Global reconstruction of the human metabolic network based on genomic and bibliomic data. |
N.C. Duarte; S.A. Becker; N. Jamshidi; I. Thiele; M.L. Mo; T.D. Vo; R. Srivas; B.Ø. Palsson |
2007 |
| Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. |
M.J. Herrgard; B.S. Lee; V.A. Portnoy; B.Ø. Palsson |
2006 |
| Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach. |
C.L. Barrett; B.Ø. Palsson |
2006 |
| Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri. |
A.M. Feist; J.C.M. Scholten; B.Ø. Palsson; F.J. Brockman; T. Ideker |
2006 |
| Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes. |
S. Fong; A. Nanchen; B.Ø. Palsson; U. Sauer |
2006 |
| Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. |
Q. Hua; A.R. Joyce; S. Fong; B.Ø. Palsson |
2006 |
| Systems biology of SNPs. |
N. Jamshidi; B.Ø. Palsson |
2006 |
| Identification of genome-scale metabolic network models using experimentally measured flux profiles. |
M.J. Herrgard; S. Fong; B.Ø. Palsson |
2006 |