| Publication Title | Authors | Publication Year Sort ascending |
|---|---|---|
| Whole-Genome Sequencing of Invasion-Resistant Cells Identifies Laminin α2 as a Host Factor for Bacterial Invasion. | X.M. van Wijk; S. Döhrmann; B.M. Hallström; S. Li; B.G. Voldborg; B.X. Meng; K.K. McKee; T.H. van Kuppevelt; P.D. Yurchenco; B.O. Palsson; N.E. Lewis; V. Nizet; J.D. Esko |
2017 |
| COBRAme: A Computational Framework for Building and Manipulating Models of Metabolism and Gene Expression | C.J. Lloyd; A. Ebrahim; L. Yang; Z.A. King; E. Catoiu; E.J. O'Brien; J.K. Liu; B.O. Palsson |
2017 |
| Metabolic Models of Protein Allocation Call for the Kinetome. | A. Nilsson; J. Nielsen; B.O. Palsson |
2017 |
| Topological and Kinetic Determinants of the Modal Matrices of Dynamic Models of Metabolism | B. Du; D.C. Zielinski; B.O. Palsson |
2017 |
| Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli. | C.P. Long; J.E. Gonzalez; A.M. Feist; B.O. Palsson; M.R. Antoniewicz |
2017 |
| Expanding The Computable Reactome In Pseudomonas putida Reveals Metabolic Cycles Providing Robustness | J. Nogales; S. Gudmundsson; E. Duque; J.Lewis Ramos; B.O. Palsson |
2017 |
| Antibiotic-Induced Changes to the Host Metabolic Environment Inhibit Drug Efficacy and Alter Immune Function. | J.H. Yang; P. Bhargava; D. McCloskey; N. Mao; B.O. Palsson; J.J. Collins |
2017 |
| Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655. | S.Woo Seo; Y. Gao; D. Kim; R. Szubin; J. Yang; B.K. Cho; B.O. Palsson |
2017 |
| Multi-omic data integration enables discovery of hidden biological regularities. | A. Ebrahim; E. Brunk; J. Tan; E.J. O'Brien; D. Kim; R. Szubin; J.A. Lerman; A. Lechner; A. Sastry; A. Bordbar; A.M. Feist; B.O. Palsson |
2016 |
| Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution. | J. Utrilla; E.J. O'Brien; K. Chen; D. McCloskey; J. Cheung; H. Wang; D. Armenta-Medina; A.M. Feist; B.O. Palsson |
2016 |
| A Phaeodactylum tricornutum literature database for interactive annotation of content | A.A. Gallina; M. Layer; Z.A. King; J. Levering; B.O. Palsson; K. Zengler; G. Peers |
2016 |
| Acidithiobacillus ferrooxidans's comprehensive model driven analysis of the electron transfer metabolism and synthetic strain design for biomining applications | M.A. Campodonico; D. Vaisman; J.F. Castro; V. Razmilic; F. Mercado; B.A. Andrews; A.M. Feist; J.A. Asenjo |
2016 |
| Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes. | J.M. Monk; A. Koza; M.A. Campodonico; D. Machado; J.Miguel Seoane; B.O. Palsson; M.J. Herrgard; A.M. Feist |
2016 |
| A modeling method for increased precision and scope of directly measurable fluxes at a genome-scale. | D. McCloskey; J.D. Young; S. Xu; B.Ø. Palsson; A.M. Feist |
2016 |
| solveME: fast and reliable solution of nonlinear ME models. | L. Yang; D. Ma; A. Ebrahim; C.J. Lloyd; M.A. Saunders; B.O. Palsson |
2016 |
| Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology. | T.E. Sandberg; C.P. Long; J.E. Gonzalez; A.M. Feist; M.R. Antoniewicz; B.O. Palsson |
2016 |
| Biomarkers defining the metabolic age of red blood cells during cold storage. | G. Paglia; A. D'Alessandro; O. Rolfsson; O.E. Sigurjónsson; A. Bordbar; S. Palsson; T. Nemkov; K.C. Hansen; S. Gudmundsson; B.O. Palsson |
2016 |
| Systems biology of the structural proteome. | E. Brunk; N. Mih; J. Monk; Z. Zhang; E.J. O'Brien; S.E. Bliven; K. Chen; R.L. Chang; P.E. Bourne; B.O. Palsson |
2016 |
| Citrate metabolism in red blood cells stored in additive solution-3. | A. D'Alessandro; T. Nemkov; T. Yoshida; A. Bordbar; B.O. Palsson; K.C. Hansen |
2016 |
| Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. | M. Wang; J.J. Carver; V.V. Phelan; L.M. Sanchez; N. Garg; Y. Peng; D.D. Nguyen; J. Watrous; C.A. Kapono; T. Luzzatto-Knaan; C. Porto; A. Bouslimani; A.V. Melnik; M.J. Meehan; W.T. Liu; M. Crüsemann; P.D. Boudreau; E. Esquenazi; M. Sandoval-Calderón; R.D. Kersten; L.A. Pace; R.A. Quinn; K.R. Duncan; C.C. Hsu; D.J. Floros; R.G. Gavilan; K. Kleigrewe; T. Northen; R.J. Dutton; D. Parrot; E.E. Carlson; B. Aigle; C.F. Michelsen; L. Jelsbak; C. Sohlenkamp; P. Pevzner; A. Edlund; J. McLean; J. Piel; B.T. Murphy; L. Gerwick; C.C. Liaw; Y.L. Yang; H.U. Humpf; M. Maansson; R.A. Keyzers; A.C. Sims; A.R. Johnson; A.M. Sidebottom; B.E. Sedio; A. Klitgaard; C.B. Larson; C.A.Boya P; D. Torres-Mendoza; D.J. Gonzalez; D.B. Silva; L.M. Marques; D.P. Demarque; E. Pociute; E.C. O'Neill; E. Briand; E.J.N. Helfrich; E.A. Granatosky; E. Glukhov; F. Ryffel; H. Houson; H. Mohimani; J.J. Kharbush; Y. Zeng; J.A. Vorholt; K.L. Kurita; P. Charusanti; K.L. McPhail; K.Fog Nielsen; L. Vuong; M. Elfeki; M.F. Traxler; N. Engene; N. Koyama; O.B. Vining; R. Baric; R.R. Silva; S.J. Mascuch; S. Tomasi; S. Jenkins; V. Macherla; T. Hoffman; V. Agarwal; P.G. Williams; J. Dai; R. Neupane; J. Gurr; A.M.C. Rodríguez; A. Lamsa; C. Zhang; K. Dorrestein; B.M. Duggan; J. Almaliti; P.M. Allard; P. Phapale; L.F. Nothias; T. Alexandrov; M. Litaudon; J.L. Wolfender; J.E. Kyle; T.O. Metz; T. Peryea; D.T. Nguyen; D. VanLeer; P. Shinn; A. Jadhav; R. Müller; K.M. Waters; W. Shi; X. Liu; L. Zhang; R. Knight; P.R. Jensen; B.Ø. Palsson; K. Pogliano; R.G. Linington; M. Gutiérrez; N.P. Lopes; W.H. Gerwick; B.S. Moore; P.C. Dorrestein; N. Bandeira |
2016 |
| What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. | D.E. Fouts; M.A. Matthias; H. Adhikarla; B. Adler; L. Amorim-Santos; D.E. Berg; D. Bulach; A. Buschiazzo; Y.F. Chang; R.L. Galloway; D.A. Haake; D.H. Haft; R. Hartskeerl; A.I. Ko; P.N. Levett; J. Matsunaga; A.E. Mechaly; J.M. Monk; A.L.T. Nascimento; K.E. Nelson; B. Palsson; S.J. Peacock; M. Picardeau; J.N. Ricaldi; J. Thaipandungpanit; E.A. Wunder; F. Yang; J.J. Zhang; J.M. Vinetz |
2016 |
| Metabolic fate of adenine in red blood cells during storage in SAGM solution. | G. Paglia; O.E. Sigurjónsson; A. Bordbar; O. Rolfsson; M. Magnúsdóttir; S. Palsson; K. Wichuk; S. Gudmundsson; B.O. Palsson |
2016 |
| Solving puzzles with missing pieces: The power of systems biology | J.T. Yurkovich; B.O. Palsson |
2016 |
| A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism. | N. Mih; E. Brunk; A. Bordbar; B.O. Palsson |
2016 |
| Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes. | A. Bordbar; P.I. Johansson; G. Paglia; S.J. Harrison; K. Wichuk; M. Magnúsdóttir; S. Valgeirsdottir; M. Gybel-Brask; S.R. Ostrowski; S. Palsson; O. Rolfsson; O.E. Sigurjónsson; M.B. Hansen; S. Gudmundsson; B.O. Palsson |
2016 |
| Construction and Evaluation of an Organic Anion Transporter 1 (OAT1)-Centered Metabolic Network. | H.C. Liu; N. Jamshidi; Y. Chen; S.A. Eraly; S.Yee Cho; V. Bhatnagar; W. Wu; K.T. Bush; R. Abagyan; B.O. Palsson; S.K. Nigam |
2016 |
| Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution. | H. Mundhada; J.M. Seoane; K. Schneider; A. Koza; H.B. Christensen; T. Klein; P.V. Phaneuf; M. Herrgard; A.M. Feist; A.T. Nielsen |
2016 |
| Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments. | E.J. O'Brien; J. Utrilla; B.O. Palsson |
2016 |
| ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions | H. Latif; S. Federowicz; A. Ebrahim; J. Tarasova; R. Szubin; J. Utrilla; K. Zengler; B.O. Palsson |
2016 |
| Reliable and efficient solution of genome-scale models of Metabolism and macromolecular Expression. | D. Ma; L. Yang; R.M.T. Fleming; I. Thiele; B.O. Palsson; M.A. Saunders |
2016 |