| What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. |
D.E. Fouts; M.A. Matthias; H. Adhikarla; B. Adler; L. Amorim-Santos; D.E. Berg; D. Bulach; A. Buschiazzo; Y.F. Chang; R.L. Galloway; D.A. Haake; D.H. Haft; R. Hartskeerl; A.I. Ko; P.N. Levett; J. Matsunaga; A.E. Mechaly; J.M. Monk; A.L.T. Nascimento; K.E. Nelson; B. Palsson; S.J. Peacock; M. Picardeau; J.N. Ricaldi; J. Thaipandungpanit; E.A. Wunder; F. Yang; J.J. Zhang; J.M. Vinetz |
2016 |
| Metabolic fate of adenine in red blood cells during storage in SAGM solution. |
G. Paglia; O.E. Sigurjónsson; A. Bordbar; O. Rolfsson; M. Magnúsdóttir; S. Palsson; K. Wichuk; S. Gudmundsson; B.O. Palsson |
2016 |
| Solving puzzles with missing pieces: The power of systems biology |
J.T. Yurkovich; B.O. Palsson |
2016 |
| A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism. |
N. Mih; E. Brunk; A. Bordbar; B.O. Palsson |
2016 |
| Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes. |
A. Bordbar; P.I. Johansson; G. Paglia; S.J. Harrison; K. Wichuk; M. Magnúsdóttir; S. Valgeirsdottir; M. Gybel-Brask; S.R. Ostrowski; S. Palsson; O. Rolfsson; O.E. Sigurjónsson; M.B. Hansen; S. Gudmundsson; B.O. Palsson |
2016 |
| MID Max: LC-MS/MS Method for Measuring the Precursor and Product Mass Isotopomer Distributions of Metabolic Intermediates and Cofactors for Metabolic Flux Analysis Applications. |
D. McCloskey; J.D. Young; S. Xu; B.O. Palsson; A.M. Feist |
2015 |
| Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations |
R.K. Aziz; J.M. Monk; R.M. Lewis; S.I. Loh; A. Mishra; A.A. Nagle; C. Satyanarayana; S. Dhakshinamoorthy; M. Luche; D.B. Kitchen; K.A. Andrews; N.L. Fong; H.J. Li; B.O. Palsson; P. Charusanti |
2015 |
| A pH and solvent optimized reverse-phase ion-paring-LC–MS/MS method that leverages multiple scan-types for targeted absolute quantification of intracellular metabolites |
D.M. McCloskey; J.A. Gangoiti; B.O. Palsson; A.M. Feist |
2015 |
| Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics |
A. Bordbar; D. McCloskey; D.C. Zielinski; N. Sonnenschein; N. Jamshidi; B.O. Palsson |
2015 |
| Decoding the jargon of bottom-up metabolic systems biology. |
O. Rolfsson; B.O. Palsson |
2015 |
| Networks of energetic and metabolic interactions define dynamics in microbial communities. |
M. Embree; J.K. Liu; M.M. Al-Bassam; K. Zengler |
2015 |
| How to set up collaborations between academia and industrial biotech companies. |
J.T. Pronk; S.Y. Lee; J. Lievense; J. Pierce; B. Palsson; M. Uhlen; J. Nielsen |
2015 |
| Optimizing eukaryotic cell hosts for protein production through systems biotechnology and genome-scale modeling. |
J.M. Gutierrez; N.E. Lewis |
2015 |
| SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks. |
A. Dräger; D.C. Zielinski; R. Keller; M. Rall; J. Eichner; B.O. Palsson; A. Zell |
2015 |
| The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli. |
S. Cho; Y.B. Cho; T.Jin Kang; S.Chang Kim; B. Palsson; B.K. Cho |
2015 |
| Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC. |
R.K. Aziz; V.L. Khaw; J.M. Monk; E. Brunk; R. Lewis; S.I. Loh; A. Mishra; A.A. Nagle; C. Satyanarayana; S. Dhakshinamoorthy; M. Luche; D.B. Kitchen; K.A. Andrews; B.Ø. Palsson; P. Charusanti |
2015 |
| Multidimensional Analytical Approach Based on UHPLC-UV-Ion Mobility-MS for the Screening of Natural Pigments. |
T. Pacini; W. Fu; S. Gudmundsson; E. Chiaravalle; S. Brynjolfson; B.O. Palsson; G. Astarita; G. Paglia |
2015 |
| Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways. |
Z.A. King; A. Dräger; A. Ebrahim; N. Sonnenschein; N.E. Lewis; B.O. Palsson |
2015 |
| Next-generation genome-scale models for metabolic engineering. |
Z.A. King; C.J. Lloyd; A.M. Feist; B.O. Palsson |
2015 |
| Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655. |
S.Woo Seo; D. Kim; R. Szubin; B.O. Palsson |
2015 |
| Computing the functional proteome: recent progress and future prospects for genome-scale models. |
E.J. O'Brien; B.O. Palsson |
2015 |
| Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data. |
L. Yang; J. Tan; E.J. O'Brien; J.M. Monk; D. Kim; H.J. Li; P. Charusanti; A. Ebrahim; C.J. Lloyd; J.T. Yurkovich; B. Du; A. Dräger; A. Thomas; Y. Sun; M.A. Saunders; B.O. Palsson |
2015 |
| Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli. |
S.Woo Seo; D. Kim; E.J. O'Brien; R. Szubin; B.O. Palsson |
2015 |
| Model-driven discovery of underground metabolic functions in Escherichia coli. |
G.I. Guzman; J. Utrilla; S. Nurk; E. Brunk; J.M. Monk; A. Ebrahim; B.O. Palsson; A.M. Feist |
2015 |
| A Markov chain model for N-linked protein glycosylation - towards a low-parameter tool for model-driven glycoengineering. |
P.N. Spahn; A.H. Hansen; H.G. Hansen; J. Arnsdorf; H.F. Kildegaard; N.E. Lewis |
2015 |
| CONDENSED VERSION--Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis |
D.C. Zielinski; F.V. Filipp; A. Bordbar; K. Jensen; J.W. Smith; M.J. Herrgard; M.L. Mo; B.Ø. Palsson |
2015 |
| Engineering of oleaginous organisms for lipid production. |
J. Levering; J. Broddrick; K. Zengler |
2015 |
| Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network. |
H. Latif; M. Sahin; J. Tarasova; Y. Tarasova; V.A. Portnoy; J. Nogales; K. Zengler |
2015 |
| A streamlined ribosome profiling protocol for the characterization of microorganisms. |
H. Latif; R. Szubin; J. Tan; E. Brunk; A. Lechner; K. Zengler; B.O. Palsson |
2015 |
| Investigating Moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model. |
A. Islam; K. Zengler; E.A. Edwards; R. Mahadevan; G. Stephanopoulos |
2015 |