M. barkeri SBML files
SBML files contain reconstruction (see sbml.org for documentation)
reactions (format: ‘R_< reaction abbreviation >’)
- reaction name, reversibility, reaction stoichiometry, gene-protein-reaction (GPR) association, subsystem, E.C. number
metabolites (format: ‘M_< metabolite abbreviation >_< compartment abbreviation >’)
- metabolite name, compartment, charge, formula (appended to the end of the name, _FORMULA)
Optional (files noted with a 'flux'): a flux distribution associated with a steady-state modeling simulation
- lower bound, upper bound, objective coefficient, flux value, reduced cost
iAF692 Published in Molecular Systems Biology (2006)
SBML (level 2, version 1): Mb_iAF692.xml
SBML (level 2, version 1) w/ a flux distribution: Mb_iAF692_flux1.xml File info: This flux distribution was generated using FBA optimizing for the flux through the 'Mb_biomass_30' reaction in the network. The constraining exchange reaction flux in the simulation is the 'Ex_meoh(e)' reaction (methanol uptake of 5.088 mmol gDW-1 hr-1). Anaerobic minimal media conditions. See file for all system constraints.
SBML files are periodically updated. For changes, see change log.