| Publication Title | Authors | Publication Year Sort ascending |
|---|---|---|
| Comprehensive metabolomic study of platelets reveals the expression of discrete metabolic phenotypes during storage. | G. Paglia; O.E. Sigurjónsson; O. Rolfsson; S. Valgeirsdottir; M.Bagge Hansen; S. Brynjólfsson; S. Gudmundsson; B.O. Palsson |
2014 |
| The Metabolic Impact of a NADH-producing Glucose-6-phosphate Dehydrogenase in Escherichia coli. | K. Olavarria; J. De Ingeniis; D.C. Zielinski; M. Fuentealba; R. Muñoz; D. McCloskey; A.M. Feist; R. Cabrera |
2014 |
| Tracing Compartmentalized NADPH Metabolism in the Cytosol and Mitochondria of Mammalian Cells. | C.A. Lewis; S.J. Parker; B.P. Fiske; D. McCloskey; D.Y. Gui; C.R. Green; N.I. Vokes; A.M. Feist; M.G.Vander Heiden; C.M. Metallo |
2014 |
| Supplementation of Saturated Long-chain Fatty Acids Maintains Intestinal Eubiosis and Reduces Ethanol-induced Liver Injury in Mice. | P. Chen; M. Torralba; J. Tan; M. Embree; K. Zengler; P. Stärkel; J.P. van Pijkeren; J. DePew; R. Loomba; S.B. Ho; J.S. Bajaj; E.A. Mutlu; A. Keshavarzian; H. Tsukamoto; K.E. Nelson; D.E. Fouts; B. Schnabl |
2014 |
| Optimal cofactor swapping can increase the theoretical yield for chemical production in Escherichia coli and Saccharomyces cerevisiae. | Z.A. King; A.M. Feist |
2014 |
| Fast Swinnex filtration (FSF): a fast and robust sampling and extraction method suitable for metabolomics analysis of cultures grown in complex media | D.M. McCloskey; J. Utrilla; R.K. Naviaux; B.O. Palsson; A.M. Feist |
2014 |
| Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis. | N. Rohatgi; T.Kragh Nielsen; S.Petersen Bjørn; I. Axelsson; G. Paglia; B.Gunnar Voldborg; B.O. Palsson; O. Rolfsson |
2014 |
| A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks. | H. Nam; M. Campodonico; A. Bordbar; D.R. Hyduke; S. Kim; D.C. Zielinski; B.O. Palsson |
2014 |
| Engineering synergy in biotechnology. | J. Nielsen; M. Fussenegger; J. Keasling; S.Y. Lee; J.C. Liao; K. Prather; B. Palsson |
2014 |
| Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. | J.K. Liu; E.J.O. Brien; J.A. Lerman; K. Zengler; B.O. Palsson; A.M. Feist |
2014 |
| Optimizing genome-scale network reconstructions. | J. Monk; J. Nogales; B.O. Palsson |
2014 |
| Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli. | S.Woo Seo; D. Kim; H. Latif; E.J. O'Brien; R. Szubin; B.O. Palsson |
2014 |
| Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in Geobacter metallireducens. | A.M. Feist; H. Nagarajan; A.E. Rotaru; P.L. Tremblay; T. Zhang; K.P. Nevin; D.R. Lovley; K. Zengler |
2014 |
| From random mutagenesis to systems biology in metabolic engineering of mammalian cells | H. Hefzi; N.E. Lewis |
2014 |
| Systems glycobiology for glycoengineering. | P.N. Spahn; N.E. Lewis |
2014 |
| Ion mobility derived collision cross sections to support metabolomics applications. | G. Paglia; J.P. Williams; L. Menikarachchi; W. Thompson; R. Tyldesley-Worster; S. Halldórsson; O. Rolfsson; A. Moseley; D. Grant; J. Langridge; B.O. Palsson; G. Astarita |
2014 |
| Metabolomic analysis of platelets during storage: a comparison between apheresis- and buffy coat-derived platelet concentrates. | G. Paglia; O.E. Sigurjónsson; O. Rolfsson; M.Bagge Hansen; S. Brynjólfsson; S. Gudmundsson; B.O. Palsson |
2014 |
| Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds. | H.Marcus Geertz-Hansen; N. Blom; A.M. Feist; S. Brunak; T.Nordahl Petersen |
2014 |
| Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction. | E.J. O'Brien; J.A. Lerman; R.L. Chang; D.R. Hyduke; B.Ø. Palsson |
2013 |
| Genomically and biochemically accurate metabolic reconstruction of Methanosarcina barkeri Fusaro, iMG746. | M.C. Gonnerman; M.N. Benedict; A.M. Feist; W.W. Metcalf; N.D. Price |
2013 |
| The systems biology simulation core algorithm. | R. Keller; A. Dörr; A. Tabira; A. Funahashi; M.J. Ziller; R. Adams; N. Rodriguez; N. Le Novère; N. Hiroi; H. Planatscher; A. Zell; A. Dräger |
2013 |
| Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima. | D.A. Rodionov; I.A. Rodionova; X. Li; D.A. Ravcheev; Y. Tarasova; V.A. Portnoy; K. Zengler; A.L. Osterman |
2013 |
| The microbiome extends to subepidermal compartments of normal skin. | T. Nakatsuji; H.I. Chiang; S.B. Jiang; H. Nagarajan; K. Zengler; R.L. Gallo |
2013 |
| TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors. | J. Eichner; F. Topf; A. Dräger; C. Wrzodek; D. Wanke; A. Zell |
2013 |
| Optimizing Cofactor Specificity of Oxidoreductase Enzymes for the Generation of Microbial Production Strains—OptSwap | Z.A. King; A.M. Feist |
2013 |
| SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. | C. Chaouiya; D. Bérenguier; S.M. Keating; A. Naldi; M.P. van Iersel; N. Rodriguez; A. Dräger; F. Büchel; T. Cokelaer; B. Kowal; B. Wicks; E. Gonçalves; J. Dorier; M. Page; P.T. Monteiro; A. von Kamp; I. Xenarios; H. de Jong; M. Hucka; S. Klamt; D. Thieffry; N. Le Novère; J. Saez-Rodriguez; T. Helikar |
2013 |
| The COMBREX project: design, methodology, and initial results. | B.P. Anton; Y.C. Chang; P. Brown; H.P. Choi; L.L. Faller; J. Guleria; Z. Hu; N. Klitgord; A. Levy-Moonshine; A. Maksad; V. Mazumdar; M. McGettrick; L. Osmani; R. Pokrzywa; J. Rachlin; R. Swaminathan; B. Allen; G. Housman; C. Monahan; K. Rochussen; K. Tao; A.S. Bhagwat; S.E. Brenner; L. Columbus; V. de Crécy-Lagard; D. Ferguson; A. Fomenkov; G. Gadda; R.D. Morgan; A.L. Osterman; D.A. Rodionov; I.A. Rodionova; K.E. Rudd; D. Söll; J. Spain; S.Y. Xu; A. Bateman; R.M. Blumenthal; M. Bollinger; W.S. Chang; M. Ferrer; I. Friedberg; M.Y. Galperin; J. Gobeill; D. Haft; J. Hunt; P. Karp; W. Klimke; C. Krebs; D. Macelis; R. Madupu; M.J. Martin; J.H. Miller; C. O'Donovan; B. Palsson; P. Ruch; A. Setterdahl; G. Sutton; J. Tate; A. Yakunin; D. Tchigvintsev; G. Plata; J. Hu; R. Greiner; D. Horn; K. Sjölander; S.L. Salzberg; D. Vitkup; S. Letovsky; D. Segrè; C. DeLisi; R.J. Roberts; M. Steffen; S. Kasif |
2013 |
| The genome organization of Thermotoga maritima reflects its lifestyle. | H. Latif; J.A. Lerman; V.A. Portnoy; Y. Tarasova; H. Nagarajan; A.C. Schrimpe-Rutledge; R.D. Smith; J.N. Adkins; D.H. Lee; Y. Qiu; K. Zengler |
2013 |
| Path2Models: large-scale generation of computational models from biochemical pathway maps. | F. Büchel; N. Rodriguez; N. Swainston; C. Wrzodek; T. Czauderna; R. Keller; F. Mittag; M. Schubert; M. Glont; M. Golebiewski; M. van Iersel; S. Keating; M. Rall; M. Wybrow; H. Hermjakob; M. Hucka; D.B. Kell; W. Müller; P. Mendes; A. Zell; C. Chaouiya; J. Saez-Rodriguez; F. Schreiber; C. Laibe; A. Dräger; N. Le Novère |
2013 |
| Reconciling a Salmonella enterica metabolic model with experimental data confirms that overexpression of the glyoxylate shunt can rescue a lethal ppc deletion mutant. | N.L. Fong; J.A. Lerman; I. Lam; B.O. Palsson; P. Charusanti |
2013 |