| Network-based analysis of metabolic regulation in the human red blood cell. |
N.D. Price; J.L. Reed; J.A. Papin; S.J. Wiback; B.Ø. Palsson |
2003 |
| Constraints-based models: regulation of gene expression reduces the steady-state solution space. |
M.W. Covert; B.Ø. Palsson |
2003 |
| Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. |
I. Famili; J. Forster; J. Nielsen; B.Ø. Palsson |
2003 |
| Genome-scale microbial in silico models: the constraints-based approach. |
N.D. Price; J.A. Papin; C.H. Schilling; B.Ø. Palsson |
2003 |
| Identifying constraints that govern cell behavior: a key to converting conceptual to computational models in biology? |
M.W. Covert; I. Famili; B.Ø. Palsson |
2003 |
| Thirteen years of building constraint-based in silico models of Escherichia coli. |
J.L. Reed; B.Ø. Palsson |
2003 |
| Development of network-based pathway definitions: the need to analyze real metabolic networks. |
B.Ø. Palsson; N.D. Price; J.A. Papin |
2003 |
| Quantitative analysis of Escherichia coli metabolic phenotypes within the context of phenotypic phase planes. |
R.U. Ibarra; P. Fu; B.Ø. Palsson; J.R. DiTonno; J.S. Edwards |
2003 |
| Metabolic pathways in the post-genome era. |
J.A. Papin; N.D. Price; S.J. Wiback; D.A. Fell; B.Ø. Palsson |
2003 |
| The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools. |
I. Famili; B.Ø. Palsson |
2003 |
| Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. |
E. Kolker; S. Purvine; M.Y. Galperin; S. Stolyar; D.R. Goodlett; A.I. Nesvizhskii; A. Keller; T. Xie; J.K. Eng; E. Yi; L. Hood; A.F. Picone; T. Cherny; B.C. Tjaden; A.F. Siegel; T.J. Reilly; K.S. Makarova; B.Ø. Palsson; A.L. Smith |
2003 |
| Scalable method to determine mutations that occur during adaptive evolution of Escherichia coli. |
A. Raghunathan; B.Ø. Palsson |
2003 |
| Systemic metabolic reactions are obtained by singular value decomposition of genome-scale stoichiometric matrices. |
I. Famili; B.Ø. Palsson |
2003 |
| Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum. |
S.J. Wiback; R. Mahadevan; B.Ø. Palsson |
2003 |
| An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). |
J.L. Reed; T.D. Vo; C.H. Schilling; B.Ø. Palsson |
2003 |
| Sequence-based analysis of metabolic demands for protein synthesis in prokaryotes. |
T.E. Allen; B.Ø. Palsson |
2003 |
| Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae. |
J. Förster; I. Famili; B.Ø. Palsson; J. Nielsen |
2003 |
| Reconciling gene expression data with known genome-scale regulatory network structures. |
M.J. Herrgard; M.W. Covert; B.Ø. Palsson |
2003 |
| Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices. |
N.D. Price; J.L. Reed; J.A. Papin; I. Famili; B.Ø. Palsson |
2003 |
| Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. |
T.E. Allen; M.J. Herrgard; M. Liu; Y. Qiu; J.D. Glasner; F.R. Blattner; B.Ø. Palsson |
2003 |
| The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy. |
J.A. Papin; N.D. Price; J.S. Edwards; B.Ø. Palsson |
2002 |
| In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism. |
N. Jamshidi; S.J. Wiback; B.Ø. Palsson |
2002 |
| H. influenzae Consortium: integrative study of H. influenzae-human interactions. |
E. Kolker; S. Purvine; A. Picone; T. Cherny; B.J. Akerley; R.S. Munson; B.Ø. Palsson; D.A. Daines; A.L. Smith |
2002 |
| Characterizing the metabolic phenotype: a phenotype phase plane analysis. |
J.S. Edwards; R. Ramakrishna; B.Ø. Palsson |
2002 |
| Characterization and efficacy of PKH26 as a probe to study the replication history of the human hematopoietic KG1a progenitor cell line. |
G.M. Lee; S. Fong; D.J. Oh; K. Francis; B.Ø. Palsson |
2002 |
| Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis. |
N.D. Price; J.A. Papin; B.Ø. Palsson |
2002 |
| Transcriptional regulation in constraints-based metabolic models of Escherichia coli. |
M.W. Covert; B.Ø. Palsson |
2002 |
| Description and analysis of metabolic connectivity and dynamics in the human red blood cell. |
K.J. Kauffman; J.D. Pajerowski; N. Jamshidi; B.Ø. Palsson; J.S. Edwards |
2002 |
| Extreme pathway analysis of human red blood cell metabolism. |
S.J. Wiback; B.Ø. Palsson |
2002 |
| Genome-scale metabolic model of Helicobacter pylori 26695. |
C.H. Schilling; M.W. Covert; I. Famili; G.M. Church; J.S. Edwards; B.Ø. Palsson |
2002 |