| Three factors underlying incorrect in silico predictions of essential metabolic genes. |
S.A. Becker; B.Ø. Palsson |
2008 |
| Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli. |
B.K. Cho; C.L. Barrett; E.M. Knight; Y.S. Park; B.Ø. Palsson |
2008 |
| Formulating genome-scale kinetic models in the post-genome era. |
N. Jamshidi; B.Ø. Palsson |
2008 |
| Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. |
B.K. Cho; E.M. Knight; C.L. Barrett; B.Ø. Palsson |
2008 |
| Genomewide identification of protein binding locations using chromatin immunoprecipitation coupled with microarray. |
B.K. Cho; E.M. Knight; B.Ø. Palsson |
2008 |
| Predicting gene essentiality using genome-scale in silico models. |
A.R. Joyce; B.Ø. Palsson |
2008 |
| Context-specific metabolic networks are consistent with experiments. |
S.A. Becker; B.Ø. Palsson |
2008 |
| Impact of individual mutations on increased fitness in adaptively evolved strains of Escherichia coli. |
K.M. Applebee; M.J. Herrgard; B.Ø. Palsson |
2008 |
| The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. |
A.M. Feist; B.Ø. Palsson |
2008 |
| Network-based prediction of human tissue-specific metabolism. |
T. Shlomi; M.N. Cabili; M.J. Herrgard; B.Ø. Palsson; E. Ruppin |
2008 |
| Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. |
J. Lee; H. Yun; A.M. Feist; B.Ø. Palsson; S.Y. Lee |
2008 |
| Top-down analysis of temporal hierarchy in biochemical reaction networks. |
N. Jamshidi; B.Ø. Palsson |
2008 |
| A genome-scale, constraint-based approach to systems biology of human metabolism. |
M.L. Mo; N. Jamshidi; B.Ø. Palsson |
2007 |
| Microbial regulatory and metabolic networks. |
B.K. Cho; P. Charusanti; M.J. Herrgard; B.Ø. Palsson |
2007 |
| Systematic condition-dependent annotation of metabolic genes. |
T. Shlomi; M.J. Herrgard; V.A. Portnoy; E. Naim; B.Ø. Palsson; R. Sharan; E. Ruppin |
2007 |
| Estimation of the number of extreme pathways for metabolic networks. |
M. Yeung; I. Thiele; B.Ø. Palsson |
2007 |
| Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli. |
O. Resendis-Antonio; J.L. Reed; S. Encarnación; J. Collado-Vides; B.Ø. Palsson |
2007 |
| Toward whole cell modeling and simulation: comprehensive functional genomics through the constraint-based approach. |
A.R. Joyce; B.Ø. Palsson |
2007 |
| Global reconstruction of the human metabolic network based on genomic and bibliomic data. |
N.C. Duarte; S.A. Becker; N. Jamshidi; I. Thiele; M.L. Mo; T.D. Vo; R. Srivas; B.Ø. Palsson |
2007 |
| Systems analysis of energy metabolism elucidates the affected respiratory chain complex in Leigh's syndrome. |
T.D. Vo; W.N. Paul Lee; B.Ø. Palsson |
2007 |
| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. |
S.A. Becker; A.M. Feist; M.L. Mo; G. Hannum; B.Ø. Palsson; M.J. Herrgard |
2007 |
| Crystal structure of a hyperactive Escherichia coli glycerol kinase mutant Gly230 --> Asp obtained using microfluidic crystallization devices. |
M.J. Anderson; B. DeLabarre; A. Raghunathan; B.Ø. Palsson; A.T. Brunger; S.R. Quake |
2007 |
| Metabolic characterization of Escherichia coli strains adapted to growth on lactate. |
Q. Hua; A.R. Joyce; B.Ø. Palsson; S. Fong |
2007 |
| Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. |
N. Jamshidi; B.Ø. Palsson |
2007 |
| In silico analysis of SNPs and other high-throughput data. |
N. Jamshidi; T.D. Vo; B.Ø. Palsson |
2007 |
| Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data. |
Y.K. Oh; B.Ø. Palsson; S.M. Park; C.H. Schilling; R. Mahadevan |
2007 |
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. |
A.M. Feist; C.S. Henry; J.L. Reed; M. Krummenacker; A.R. Joyce; P.D. Karp; L.J. Broadbelt; V. Hatzimanikatis; B.Ø. Palsson |
2007 |
| Building the power house: recent advances in mitochondrial studies through proteomics and systems biology. |
T.D. Vo; B.Ø. Palsson |
2007 |
| An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes. |
C.D. Herring; B.Ø. Palsson |
2007 |
| Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. |
R. Mahadevan; D.R. Bond; J.E. Butler; A. Esteve-Nuñez; M.V. Coppi; B.Ø. Palsson; C.H. Schilling; D.R. Lovley |
2006 |