| The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions. |
O. Rolfsson; B.Ø. Palsson; I. Thiele |
2011 |
| A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution. |
P.L. Tremblay; Z.M. Summers; R.H. Glaven; K.P. Nevin; K. Zengler; C.L. Barrett; Y. Qiu; B.O. Palsson; D.R. Lovley |
2011 |
| Microbial laboratory evolution in the era of genome-scale science. |
T.M. Conrad; N.E. Lewis; B.Ø. Palsson |
2011 |
| An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92. |
P. Charusanti; S. Chauhan; K. McAteer; J.A. Lerman; D.R. Hyduke; V.L. Motin; C. Ansong; J.N. Adkins; B.O. Palsson |
2011 |
| A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. |
J.D. Orth; T.M. Conrad; J. Na; J.A. Lerman; H. Nam; A.M. Feist; B.Ø. Palsson |
2011 |
| A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. |
A. Bordbar; A.M. Feist; R. Usaite-Black; J. Woodcock; B.O. Palsson; I. Famili |
2011 |
| A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. |
I. Thiele; D.R. Hyduke; B. Steeb; G. Fankam; D.K. Allen; S. Bazzani; P. Charusanti; F.C. Chen; R.M.T. Fleming; C.A. Hsiung; S.C.J. De Keersmaecker; Y.C. Liao; K. Marchal; M.L. Mo; E. Özdemir; A. Raghunathan; J.L. Reed; Sil Shin; S. Sigurbjörnsdóttir; J. Steinmann; S. Sudarsan; N. Swainston; I.M. Thijs; K. Zengler; B.O. Palsson; J.N. Adkins; D. Bumann |
2011 |
| Cumulative number of cell divisions as a meaningful timescale for adaptive laboratory evolution of Escherichia coli. |
D.H. Lee; A.M. Feist; C.L. Barrett; B.Ø. Palsson |
2011 |
| Technologies and approaches to elucidate and model the virulence program of salmonella. |
J.E. McDermott; H. Yoon; E.S. Nakayasu; T.O. Metz; D.R. Hyduke; A.S. Kidwai; B.O. Palsson; J.N. Adkins; F. Heffron |
2011 |
| Elimination of thermodynamically infeasible loops in steady-state metabolic models. |
J. Schellenberger; N.E. Lewis; B.Ø. Palsson |
2011 |
| iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states. |
A. Bordbar; N. Jamshidi; B.O. Palsson |
2011 |
| Linkage of organic anion transporter-1 to metabolic pathways through integrated "omics"-driven network and functional analysis. |
S.Y. Ahn; N. Jamshidi; M.L. Mo; W. Wu; S.A. Eraly; A. Dnyanmote; K.T. Bush; T.F. Gallegos; D.H. Sweet; B.Ø. Palsson; S.K. Nigam |
2011 |
| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. |
J. Schellenberger; R. Que; R.M.T. Fleming; I. Thiele; J.D. Orth; A.M. Feist; D.C. Zielinski; A. Bordbar; N.E. Lewis; S. Rahmanian; J. Kang; D.R. Hyduke; B.Ø. Palsson |
2011 |
| The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. |
X. Xu; H. Nagarajan; N.E. Lewis; S. Pan; Z. Cai; X. Liu; W. Chen; M. Xie; W. Wang; S. Hammond; M.R. Andersen; N. Neff; B. Passarelli; W. Koh; C.H. Fan; J. Wang; Y. Gui; K.H. Lee; M.J. Betenbaugh; S.R. Quake; I. Famili; B.O. Palsson; J. Wang |
2011 |
| A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1. |
M.I. Sigurdsson; N. Jamshidi; E. Steingrimsson; I. Thiele; B.Ø. Palsson |
2010 |
| A protocol for generating a high-quality genome-scale metabolic reconstruction. |
I. Thiele; B.Ø. Palsson |
2010 |
| Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. |
A. Bordbar; N.E. Lewis; J. Schellenberger; B.Ø. Palsson; N. Jamshidi |
2010 |
| Towards genome-scale signalling network reconstructions. |
D.R. Hyduke; B.Ø. Palsson |
2010 |
| RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. |
T.M. Conrad; M. Frazier; A.R. Joyce; B.K. Cho; E.M. Knight; N.E. Lewis; R. Landick; B.Ø. Palsson |
2010 |
| What is flux balance analysis? |
J.D. Orth; I. Thiele; B.Ø. Palsson |
2010 |
| Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene. |
P. Charusanti; T.M. Conrad; E.M. Knight; K. Venkataraman; N.L. Fong; B. Xie; Y. Gao; B.Ø. Palsson |
2010 |
| Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA. |
A. Klimes; A.E. Franks; R.H. Glaven; H. Tran; C.L. Barrett; Y. Qiu; K. Zengler; D.R. Lovley |
2010 |
| Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models. |
N. Jamshidi; B.Ø. Palsson |
2010 |
| Microbiology. Topping off a multiscale balancing act. |
J.A. Lerman; B.Ø. Palsson |
2010 |
| Reconstruction annotation jamborees: a community approach to systems biology. |
I. Thiele; B.Ø. Palsson |
2010 |
| Large-scale in silico modeling of metabolic interactions between cell types in the human brain. |
N.E. Lewis; G. Schramm; A. Bordbar; J. Schellenberger; M.P. Andersen; J.K. Cheng; N. Patel; A. Yee; R.A. Lewis; R. Eils; R. König; B.Ø. Palsson |
2010 |
| The challenges of integrating multi-omic data sets. |
B.Ø. Palsson; K. Zengler |
2010 |
| BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. |
J. Schellenberger; J.O. Park; T.M. Conrad; B.Ø. Palsson |
2010 |
| The biomass objective function. |
A.M. Feist; B.Ø. Palsson |
2010 |
| Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1,2-propanediol. |
D.H. Lee; B.Ø. Palsson |
2010 |