Towards multidimensional genome annotation.

TitleTowards multidimensional genome annotation.
Publication TypeJournal Article
Year of Publication2006
AuthorsReed JL, Famili I, Thiele I, Palsson BØ
JournalNature reviews. Genetics
Volume7
Issue2
Pagination130-41
PubMed Date2006 Feb
ISSN1471-0056
KeywordsArchaeal Proteins, Bacterial Proteins, Computational Biology, Databases, Genetic, Genome, Archaeal, Genome, Bacterial, Protein Interaction Mapping
Abstract

Our information about the gene content of organisms continues to grow as more genomes are sequenced and gene products are characterized. Sequence-based annotation efforts have led to a list of cellular components, which can be thought of as a one-dimensional annotation. With growing information about component interactions, facilitated by the advancement of various high-throughput technologies, systemic, or two-dimensional, annotations can be generated. Knowledge about the physical arrangement of chromosomes will lead to a three-dimensional spatial annotation of the genome and a fourth dimension of annotation will arise from the study of changes in genome sequences that occur during adaptive evolution. Here we discuss all four levels of genome annotation, with specific emphasis on two-dimensional annotation methods.

Alternate JournalNat. Rev. Genet.
PubMed ID16418748

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