JSBML 1.0: providing a smorgasbord of options to encode systems biology models.

TitleJSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Publication TypeJournal Article
Year of Publication2015
AuthorsRodriguez N, Thomas A, Watanabe L, Vazirabad IY, Kofia V, Gómez HF, Mittag F, Matthes J, Rudolph J, Wrzodek F, Netz E, Diamantikos A, Eichner J, Keller R, Wrzodek C, Fröhlich S, Lewis NE, Myers CJ, Le Novère N, Palsson BØ, Hucka M, Dräger A
JournalBioinformatics
PubMed Date06/2015
ISSN1367-4811
Abstract

JSBML, the official pure Java programming library for the SBML format, has evolved with the advent of different modeling formalisms in systems biology and their ability to be exchanged and represented via extensions of SBML. JSBML has matured into a major, active open-source project with contributions from a growing, international team of developers who not only maintain compatibility with SBML, but also drive steady improvements to the Java interface and promote ease-of-use with end users.
AVAILABILITY: Source code, binaries and documentation for JSBML can be freely obtained under the terms of the LGPL 2.1 from the website http://sbml.org/Software/JSBML.
SUPPLEMENTARY INFORMATION: More information about JSBML can be found in the user guide at http://sbml.org/Software/JSBML/docs/.
CONTACT: jsbml-development@googlegroups.com.

Alternate JournalBioinformatics
PubMed ID26079347
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