Publications

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Rowe E, Palsson BO, King ZA.  2018.  Escher-FBA: a web application for interactive flux balance analysis. BMC Systems Biology.
Rolfsson O, Palsson BØ, Thiele I.  2011.  The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions.. BMC Syst Biol. 5:155.
Rolfsson O, Johannsson F, Magnúsdóttir M, Paglia G, Sigurjónsson OE, Bordbar A, Palsson S, Brynjólfsson S, Guðmundsson S, Palsson B.  2017.  Mannose and fructose metabolism in red blood cells during cold storage in SAGM.. Transfusion.
Rolfsson Ó, Sigurjonsson ÓE, Magnusdottir M, Johannsson F, Paglia G, Guðmundsson S, Bordbar A, Palsson S, Brynjólfsson S, Guðmundsson S et al..  2017.  Metabolomics comparison of red cells stored in four additive solutions reveals differences in citrate anticoagulant permeability and metabolism.. Vox Sang.
Rolfsson O, Paglia G, Magnusdóttir M, Palsson BØ, Thiele I.  2013.  Inferring the metabolism of human orphan metabolites from their metabolic network context affirms human gluconokinase activity.. Biochem J. 449(2):427-35.
Rolfsson O, Palsson BO.  2015.  Decoding the jargon of bottom-up metabolic systems biology.. Bioessays.
Rohatgi N, Nielsen TKragh, Bjørn SPetersen, Axelsson I, Paglia G, Voldborg BGunnar, Palsson BO, Rolfsson O.  2014.  Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis.. PLoS One. 9(6):e98760.
Rogers CE, Bradley MS, Palsson BØ, Koller MR.  1996.  Flow cytometric analysis of human bone marrow perfusion cultures: erythroid development and relationship with burst-forming units-erythroid.. Experimental hematology. 24(5):597-604.
Rodriguez N, Thomas A, Watanabe L, Vazirabad IY, Kofia V, Gómez HF, Mittag F, Matthes J, Rudolph J, Wrzodek F et al..  2015.  JSBML 1.0: providing a smorgasbord of options to encode systems biology models.. Bioinformatics.
Rodionov DA, Rodionova IA, Li X, Ravcheev DA, Tarasova Y, Portnoy VA, Zengler K, Osterman AL.  2013.  Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima.. Front Microbiol. 4:244.
Resendis-Antonio O, Reed JL, Encarnación S, Collado-Vides J, Palsson BØ.  2007.  Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli.. PLoS computational biology. 3(10):1887-95.
Reed JL, Famili I, Thiele I, Palsson BØ.  2006.  Towards multidimensional genome annotation.. Nature reviews. Genetics. 7(2):130-41.
Reed JL, Palsson BØ.  2003.  Thirteen years of building constraint-based in silico models of Escherichia coli.. Journal of bacteriology. 185(9):2692-9.
Reed JL, Patel TR, Chen KH, Joyce AR, Applebee KM, Herring CD, Bui OT, Knight EM, Fong S, Palsson BØ.  2006.  Systems approach to refining genome annotation.. Proceedings of the National Academy of Sciences of the United States of America. 103(46):17480-4.
Reed JL, Vo TD, Schilling CH, Palsson BØ.  2003.  An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR).. Genome biology. 4(9):R54.
Reed JL, Palsson BØ.  2004.  Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states.. Genome research. 14(9):1797-805.
Ravcheev DA, Li X, Latif H, Zengler K, Leyn SA, Korostelev YD, Kazakov AE, Novichkov PS, Osterman AL, Rodionov DA.  2012.  Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex.. J Bacteriol. 194(5):1145-57.
Ramakrishna R, Edwards JS, McCulloch A, Palsson BØ.  2001.  Flux-balance analysis of mitochondrial energy metabolism: consequences of systemic stoichiometric constraints.. American journal of physiology. Regulatory, integrative and comparative physiology. 280(3):R695-704.
Raghunathan A, Price ND, Galperin MY, Makarova KS, Purvine S, Picone AF, Cherny T, Xie T, Reilly TJ, Munson R et al..  2004.  In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium.. Omics : a journal of integrative biology. 8(1):25-41.
Raghunathan A, Palsson BØ.  2003.  Scalable method to determine mutations that occur during adaptive evolution of Escherichia coli.. Biotechnology letters. 25(5):435-41.
Raghunathan A, Reed JL, Shin S, Palsson BØ, Daefler S.  2009.  Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction.. BMC systems biology. 3:38.

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