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Kumar A, Harrelson T, Lewis NE, Gallagher EJ, LeRoith D, Shiloach J, Betenbaugh MJ.  2014.  Multi-Tissue Computational Modeling Analyzes Pathophysiology of Type 2 Diabetes in MKR Mice.. PLoS One. 9(7):e102319.
Koller MR, Bradley MS, Palsson BØ.  1995.  Growth factor consumption and production in perfusion cultures of human bone marrow correlate with specific cell production.. Experimental hematology. 23(12):1275-83.
Koller MR, Manchel I, Palsson BØ.  1997.  Importance of parenchymal:stromal cell ratio for the ex vivo reconstitution of human hematopoiesis.. Stem cells (Dayton, Ohio). 15(4):305-13.
Koller MR, Emerson SG, Palsson BØ.  1993.  Large-scale expansion of human stem and progenitor cells from bone marrow mononuclear cells in continuous perfusion cultures.. Blood. 82(2):378-84.
Koller MR, Hanania EG, Stevens J, Eisfeld TM, Sasaki GC, Fieck A, Palsson BØ.  2004.  High-throughput laser-mediated in situ cell purification with high purity and yield.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 61(2):153-61.
Koller MR, Manchel I, Palsson MA, Maher RJ, Palsson BØ.  1996.  Different measures of human hematopoietic cell culture performance are optimized under vastly different conditions.. Biotechnology and bioengineering. 50(5):505-13.
Koller MR, Palsson MA, Manchel I, Maher RJ, Palsson BØ.  1998.  Tissue culture surface characteristics influence the expansion of human bone marrow cells.. Biomaterials. 19(21):1963-72.
Koller MR, Palsson BØ.  1993.  Review: tissue engineering: reconstitution of human hematopoiesis ex vivo.. Biotechnology and bioengineering. 42(8):909-30.
Koller MR, Oxender M, Brott DA, Palsson BØ.  1996.  flt-3 ligand is more potent than c-kit ligand for the synergistic stimulation of ex vivo hematopoietic cell expansion.. Journal of hematotherapy. 5(5):449-59.
Koller MR, Manchel I, Newsom BS, Palsson MA, Palsson BØ.  1995.  Bioreactor expansion of human bone marrow: comparison of unprocessed, density-separated, and CD34-enriched cells.. Journal of hematotherapy. 4(3):159-69.
Koller MR, Manchel I, Brott DA, Brott DA.  1996.  Donor-to-donor variability in the expansion potential of human bone marrow cells is reduced by accessory cells but not by soluble growth factors.. Experimental hematology. 24(13):1484-93.
Koller MR, Palsson MA, Manchel I, Palsson BØ.  1995.  Long-term culture-initiating cell expansion is dependent on frequent medium exchange combined with stromal and other accessory cell effects.. Blood. 86(5):1784-93.
Kolker E, Purvine S, Galperin MY, Stolyar S, Goodlett DR, Nesvizhskii AI, Keller A, Xie T, Eng JK, Yi E et al..  2003.  Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.. Journal of bacteriology. 185(15):4593-602.
Kolker E, Purvine S, Picone A, Cherny T, Akerley BJ, Munson RS, Palsson BØ, Daines DA, Smith AL.  2002.  H. influenzae Consortium: integrative study of H. influenzae-human interactions.. Omics : a journal of integrative biology. 6(4):341-8.
Klimes A, Franks AE, Glaven RH, Tran H, Barrett CL, Qiu Y, Zengler K, Lovley DR.  2010.  Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA.. FEMS microbiology letters. 310(1):62-8.
King ZA, Feist AM.  2014.  Optimal cofactor swapping can increase the theoretical yield for chemical production in Escherichia coli and Saccharomyces cerevisiae.. Metab Eng. 24C:117-128.
King ZA, Dräger A, Ebrahim A, Sonnenschein N, Lewis NE, Palsson BO.  2015.  Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.. PLoS Comput Biol. 11(8):e1004321.
King ZA, Lloyd CJ, Feist AM, Palsson BO.  2015.  Next-generation genome-scale models for metabolic engineering.. Curr Opin Biotechnol. 35C:23-29.
King ZA, O'Brien EJ, Feist AM, Palsson BO.  2016.  Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion.. Metab Eng.
King ZA, Feist AM.  2013.  Optimizing Cofactor Specificity of Oxidoreductase Enzymes for the Generation of Microbial Production Strains—OptSwap. Industrial Biotechnology. 9(4):236-246.
King ZA, Lu J, Dräger A, Miller P, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, Lewis NE.  2016.  BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.. Nucleic Acids Res.
Kim Y-M, Schmidt BJ, Kidwai AS, Jones MB, Deatherage Kaiser BL, Brewer HM, Mitchell HD, Palsson BO, McDermott JE, Heffron F et al..  2013.  Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes.. Mol Biosyst.
Kim D, Seo SWoo, Nam H, Guzman GI, Gao Y, Palsson BO.  2016.  Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP. bioRxiv.
Kim D, Hong J S-J, Qiu Y, Nagarajan H, Seo J-H, Cho B-K, Tsai S-F, Palsson BØ.  2012.  Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling.. PLoS Genet. 8(8):e1002867.
Kim D, Seo SWoo, Gao Y, Nam H, Guzman GI, Cho B-K, Palsson BO.  2018.  Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP.. Nucleic Acids Res.
Keller R, Dörr A, Tabira A, Funahashi A, Ziller MJ, Adams R, Rodriguez N, Le Novère N, Hiroi N, Planatscher H et al..  2013.  The systems biology simulation core algorithm.. BMC Syst Biol. 7:55.
Keasling JD, Palsson BØ, Cooper S.  1992.  Replication of prophage P1 is cell-cycle specific.. Journal of bacteriology. 174(13):4457-62.
Keasling JD, Palsson BØ, Cooper S.  1992.  Replication of mini-F plasmids during the bacterial division cycle.. Research in microbiology. 143(6):541-8.
Kavvas ES, Seif Y, Yurkovich JT, Norsigian C, Poudel S, Greenwald WW, Ghatak S, Palsson BO, Monk JM.  2018.  Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions.. BMC Syst Biol. 12(1):25.
Kavvas ES, Catoiu E, Mih N, Yurkovich JT, Seif Y, Dillon N, Heckmann D, Anand A, Yang L, Nizet V et al..  2018.  Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance. Nature Communications.
Kauffman KJ, Pajerowski J D, Jamshidi N, Palsson BØ, Edwards JS.  2002.  Description and analysis of metabolic connectivity and dynamics in the human red blood cell.. Biophysical journal. 83(2):646-62.
Kabimoldayev I, Nguyen ADuc, Yang L, Park S, Lee EYeol, Kim D.  2018.  Basics of genome-scale metabolic modeling and applications on C1-utilization.. FEMS Microbiol Lett.



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