Publications

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E
Emerson SG, Palsson BØ, Clarke MF, Silver SM, Adams PT, Koller MR, Van Zant G, Rummel S, Armstrong RD, Maluta J.  1995.  In vitro expansion of hematopoietic cells for clinical application.. Cancer treatment and research. 76:215-23.
Embree M, Nagarajan H, Movahedi N, Chitsaz H, Zengler K.  2013.  Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community.. ISME J.
Embree M, Liu JK, Al-Bassam MM, Zengler K.  2015.  Networks of energetic and metabolic interactions define dynamics in microbial communities.. Proc Natl Acad Sci U S A.
Eipers PG, Krauss JC, Palsson BØ, Emerson SG, Todd RF, Clarke MF.  1995.  Retroviral-mediated gene transfer in human bone marrow cells growth in continuous perfusion culture vessels.. Blood. 86(10):3754-62.
Eichner J, Topf F, Dräger A, Wrzodek C, Wanke D, Zell A.  2013.  TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors.. PLoS One. 8(12):e82238.
Edwards JS, Palsson BØ.  2000.  Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.. BMC bioinformatics. 1:1.
Edwards JS, Palsson BØ.  2000.  Multiple steady states in kinetic models of red cell metabolism.. Journal of theoretical biology. 207(1):125-7.
Edwards JS, Palsson BØ.  1998.  How will bioinformatics influence metabolic engineering? Biotechnology and bioengineering. 58(2-3):162-9.
Edwards JS, Palsson BØ.  2000.  Robustness analysis of the Escherichia coli metabolic network.. Biotechnology progress. 16(6):927-39.
Edwards JS, Palsson BØ.  1999.  Systems properties of the Haemophilus influenzae Rd metabolic genotype.. The Journal of biological chemistry. 274(25):17410-6.
Edwards JS, Ibarra RU, Palsson BØ.  2001.  In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data.. Nature biotechnology. 19(2):125-30.
Edwards JS, Covert MW, Palsson BØ.  2002.  Metabolic modelling of microbes: the flux-balance approach.. Environmental microbiology. 4(3):133-40.
Edwards JS, Palsson BØ.  2000.  The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities.. Proceedings of the National Academy of Sciences of the United States of America. 97(10):5528-33.
Edwards JS, Ramakrishna R, Palsson BØ.  2002.  Characterizing the metabolic phenotype: a phenotype phase plane analysis.. Biotechnology and bioengineering. 77(1):27-36.
Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RMt et al..  2015.  Do genome-scale models need exact solvers or clearer standards? Mol Syst Biol. 11(10):831.
Ebrahim A, Brunk E, Tan J, O'Brien EJ, Kim D, Szubin R, Lerman JA, Lechner A, Sastry A, Bordbar A et al..  2016.  Multi-omic data integration enables discovery of hidden biological regularities.. Nat Commun. 7:13091.
Ebrahim A, Lerman JA, Palsson BO, Hyduke DR.  2013.  COBRApy: COnstraints-Based Reconstruction and Analysis for Python.. BMC Syst Biol. 7(1):74.

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