Lectures Beng 213 Spring 2009

Systems Biology and Bioengineering III:

Building and Simulating Dynamic Models
Lecture: Tu/Th 11:00 - 12:20 PM in PFBH 161

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2009 Schedule

Date Topic Lecturer Material
3/31
4/2

4/7
4/9

4/14
4/16

4/21
4/23

4/28
4/30

5/5
5/7

5/12
5/14

5/19
5/21

5/26
5/28

6/1
6/2
6/4

Course introduction and dynamic simulation
Kinetics: basic concepts

Simulating chemical reactions/enzyme catalysis
Open systems/orders of magnitude

Stoichiometric texture/regulation as elementary phenomena
Regulation

Metabolic Pathways
The Glycolysis Model

The Gradient Matrix
The Concentration Jacobian

Bi-linear Reactions
Non-linear dynamics/ bifuraction theory

Non-linear dynamics
Non-linear dynamics

Non-linear dynamics
Preliminary Project Presentations

Time scale decomposition part 1
Constructing dynamic models

Project Presentations - 3:00 PM Fung Auditorium
work on projects
work on projects

JDO
BOP

BOP
BOP

BOP
BOP

BOP
BOP

BOP
BOP

BOP
JH

JH
JH

JH
class

BOP
BOP

class




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Location

Location

417 Powell-Focht Bioengineering Hall

9500 Gilman Drive La Jolla, CA 92093-0412

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